Unison: An Integrated Platform for Computational Biology Discovery


Reece K. Hart and Kiran Mukhyala


Genentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA
Email: rkh @ gene.com


Pacific Symposium on Biocomputing 14:403-414(2009)


Abstract

This paper describes the design and applications of Unison, a comprehensive and integrated warehouse of protein sequences, diverse precomputed predictions, and other biological data. Unison provides a practical solution to the burden of preparing data for computational discovery projects, enables holistic feature-based mining queries regarding protein composition and functions, and provides a foundation for the development of new tools. Unison is available for immediate use online via direct database connections and a web interface. In addition, the database schema, command line tools, web interface, and non-proprietary precomputed predictions are released under the Academic Free License and available for download at http://unison-db.org/. This project has resulted in a system that significantly reduces several practical impediments to the initiation of computational biology discovery projects.


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