Critical Analysis of Transcriptional and Post-Transcriptional Regulatory Networks in Multiple Myeloma


Marta Biasiolo1, Mattia Forcato 2, Lino Possamai3, Francesco Ferrari1, Luca Agnelli4, Marta Lionetti4, Katia Todoerti4, Antonino Neri4, Massimo Marchiori3, Stefania Bortoluzzi1, Silvio Bicciato2



1Dipartimento di Biologia, Università di Padova, via U. Bassi 58/ B, 35121, Padova, Italy; 2 Dipartimento di Scienze Biomediche, Università di Modena, via G. Campi 287, 41125, Modena, Italy; 3Dipartimento di Matematica Pura ed Applicata, Università di Padova, via Trieste 63,35121, Padova, Italy; 4Dipartimento di Scienze Mediche, Università di Milano, Ematologia 1, CTMO, Fondazione IRCCS Ospedale Policlinico, Via F. Sforza, 35, 20122 Milano

Pacific Symposium on Biocomputing 15:397-408(2010)



Abstract

Network analysis has emerged as a powerful approach to understand complex phenomena and organization in social, technological and biological systems. In particular, it is increasingly recognized the role played by the topology of cellular networks, the intricate web of interactions among genes, proteins and other molecules regulating cell activity, in unveiling the biological mechanisms underlying the physiological states of living organisms. In this study, critical analysis of network components has been applied to inspect the transcriptional and post-transcriptional regulatory networks reconstructed from mRNA and microRNA expression data of multiple myeloma (MM) samples. Specifically, the importance of a gene as a putative regulatory element has been assessed calculating the drop in the network performance caused by its deactivation instead of quantifying its degree of connectivity. The application of critical analysis to transcriptional and post-transcriptional regulatory networks allowed inferring novel regulatory relations potentially functional in multiple myeloma.


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