Call for Papers and Participation

 

Computational Proteomics

 

at the Pacific Symposium on Biocomputing 2006

January 3-7, 2006

Grand Wailea, Maui

 

 

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Summary

           

Currently, technologies employing mass spectrometry (MS) have revolutionized proteomics by offering a platform on which to make high-throughput measurements at a global scale. This session is designed to bring together scientists in the computational sciences to explore the current state-of-the-art research taking place in all aspects of proteomics with special emphasis on MS-based approaches.  This era of MS-based proteomics requires bioinformatics methods that can make biological inferences from both the raw experimental data sources (e.g., peptide identifications and mass measurements) and the resulting identifications. 

 

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Topics of Interest

 

This session will focus on the current state-of-the-art informatics research taking place in proteomics.  The goals of this session are the presentation and discussion of research, algorithms, and methods for proteomics issues.  Examples of areas of interest include, but are not restricted to

·        Peptide/protein identification

·        Detection of post-translational modifications

·        Statistical measures of confidence

·        Methods of normalization or quantification

·        Protein-protein interactions

·        Standards

·        Visualization

A special emphasis is placed on MS-based proteomics, but research associated with other proteomic technologies is welcomed.

 

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General Information on PSB

 

The Pacific Symposium on Biocomputing (PSB) 2006 is an international, multidisciplinary conference for the presentation and discussion of current research in the theory and application of computational methods in problems of biological significance. Papers and presentations are rigorously peer reviewed and are published in an archival proceedings volume. PSB 2006 will be held January 3-7, 2006 at the Grand Wailea in Wailea, Maui. Tutorials will be offered prior to the start of the conference.

 

The PSB has been designed to be responsive to the need for critical mass in sub-disciplines within biocomputing. For that reason, it is the only meeting whose sessions are defined dynamically each year in response to specific proposals. PSB sessions are organized by leaders in the emerging areas and targeted to provide a forum for publication and discussion of research in biocomputing's "hot topics." In this way, PSB provides an early forum for serious examination of emerging methods and approaches in this rapidly changing field.  More information on the conference can be obtained from the conference web page: http://psb.stanford.edu/.

 

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Important Dates

 

·        Submissions are due July 18, 2005

·        Decisions are announced September 6, 2005

·        Camera ready copy due September 23, 2005

·        Poster abstracts due November 1, 2005

 

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Submission Information

 

The conference is focused on rigorously peer-reviewed full-length papers on original research.  The accepted manuscripts will be published in a bound archival proceeding, available online via the PSB website, and referenced in online sources such as PubMed.  The best of the papers will be accepted for oral presentation to the entire conference.  A poster session is available for researchers who wish to present their work without official publication.

 

All papers must be submitted to russ.altman@stanford.edu in electronic format.  Only files in one of three formats are acceptable: postscript (*.ps), Adobe Acrobat (*.pdf), and Microsoft word (*.doc).  Attached files should be named with the first author’s last name (e.g., altman.pdf).  Hardcopy submission or unprocessed TEX or LATEX files will be rejected without review.

 

Each paper must be accompanied by a cover letter with the following information:

·        Email address of corresponding author

·        The specific PSB session that should review the paper or abstract

·        A list of 5 individuals qualified to review the paper

·        The submitted papers contains original, unpublished results, and is not currently under consideration elsewhere

·        All co-authors concur with the contents of the paper

 

Submitted papers are limited to twelve (12) pages in the official PSB publication format. Please format your paper according to these instructions, which can be found at http://psb.stanford.edu/psb-online/psb-submit/. If figures cannot be easily resized and placed precisely in the text, then it should be clear that with appropriate modifications, the total manuscript length would be within the page limit.

 

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Session co-chairs

 

Bobbie-Jo Webb-Robertson

Pacific Northwest National Laboratory

bj@pnl.gov

 

Bill Cannon

Pacific Northwest National Laboratory

bill@pnl.gov

 

Joshua Adkins

Pacific Northwest National Laboratory

joshua.adkins@pnl.gov

 

Deborah Gracio

Pacific Northwest National Laboratory

debbie.gracio@pnl.gov